Center for Molecular Medicine Cologne

February 17, 2022 - Thursday

9:45 - 10:00 a.m.

CMMC Report "Preparation of the new Funding Period"

Thomas Benzing - Chair of the CMMC

  • CMMC General Assembly for CMMC Members and
  • interested Members of the University of Cologne

10:00 a.m. - 3:00 p.m.

Workshop Sessions

10:00 a.m. - 12:00 p.m.

Workshop 1
Studying cell-cell communication in disease development and therapy response

Organizers: Johannes Brägelmann and Nieves Peltzer

Cell-Cell Communication (CCC) orchestrates organismal development, homeostasis and tissue function and is altered in many disease states. Our workshop aims to provide a platform for researchers to discuss their approaches to studying cell-cell communication and tissue microenvironments in vitro and in vivo. We envision that participants gain deeper insights into various aspects regarding CCC studies and an overview about state of the art technologies and methods that may be relevant for their own research. 

Invited participants of the roundtable discussions: Matteo Bergami - Andreas Beyer - Jens Brüning - Sabine Eming - Axel Hillmer - Michael Hölzel - Phuong-Hien Nguyen - Carien Niessen - Hans A Schlösser - Henning Walczak - Thomas Wunderlich

Cell-cell communication (CCC) orchestrates organismal development, homeostasis and tissue function. Dynamic and adaptable intercellular communication is particularly relevant during immune to non-immune cell crosstalk to protect against pathogens and malignant cells. However, dysfunctional or exacerbated CCC can lead to diseases such as chronic inflammation, autoimmunity and cancer. Thus, the identification and quantification of communication networks and cellular crosstalk in health, disease developemnt and during therapy is of interest across diverse disciplines. During CCC, signalling events are often mediated by interactions of various types of proteins, but also by non-peptide molecules and metabolites. Irrespective of the message sent, the effects in receiving cells strongly depend on their current state, but also on their surroundings. It is therefore fundamental to characterize the role of cells in their microenvironment to understand the directionality, magnitude and biological relevance of CCC and to eventually influence it for patient benefit.

In recent years, an immense plethora of novel techniques and animal models have emerged to study CCC. This includes approaches to visualize tissue heterogeneity, single-cell analyses, co-culturing and in vivo modeling of cellular interaction. These emerging technologies are capable of revealing data on the physical characteristics of cells, differences in the genome or transcriptome between cell types, and variations in proportion and activation of distinct cell subpopulations. Moreover, new in vitro or ex vivo model systems facilitate studying direct cell–cell interactions and cell signaling. They thereby contribute to the elucidation of diverse aspects of CCC. The efficient integration of these multi-disciplinary methodologies and tools will be crucial to further expand our knowledge and eventually use this for therapeutic purposes.

Our workshop is therefore aimed to provide an opportunity for researchers to present and discuss their scientific research relevant to the utilization of techniques and technologies for studying CCC. We envision that participants gain deeper insights into the different aspects and possibilities that can be used to study CCC and use it in their own research.

Invited participants of the roundtable discussions: Matteo Bergami - Andreas Beyer - Jens Brüning - Sabine Eming - Axel Hillmer - Michael Hölzel - Marcus Krüger - Phuong-Hien Nguyen - Carien Niessen - Henning Walczak - Thomas Wunderlich

12:30 p.m. -  2:30 p.m.

Workshop 2
Data Science Graduate Program in Cologne

Organizers: Katarzyna Bozek and Philipp Antczak

From astronomy to medicine, large data are transforming modern research. To be able to analyse and interpret these broad datasets, data science has become a key discipline across the scientific landscape. In this workshop we plan to discuss a new graduate program designed to train the right profile of interdisciplinary computational scientists addressing the needs of large data analysis across natural sciences. We want to define what requirements such a program should fulfill in training young scientists and how to make this structure visible and attractive outside of Cologne. We believe this program will allow not only to respond to the growing data analysis needs on the campus but also facilitate recruiting computational talent.

Invited participants of the roundtable discussions: Oya Beyan - Andreas Beyer - Liliana Caldeira - Debora Grosskopf-Kroiher - Axel Klawonn - Michael Lässig - Martin Peifer - Achim Tresch

From astronomy to medicine, large data are transforming modern research. To be able to analyze and interpret these broad datasets, data science and computational biology have become a key discipline across the scientific landscape. With ever increasing computational power, and more complex computational methods we need to adjust the profile of future scientists to become much more interdisciplinary and straddle fields.

Such scientists should have a strong computational training and a good knowledge in the field their analyses are applied to. This combination, with a focus on analytical methods would provide these researchers the best possible starting point to address the vast volumes of data generated. Finally, these data analysts should have strong capacities of performing collaborative work and thriving in an interdisciplinary research environment.

We recognize the growing need of such scientists at the University and University Hospital Cologne. With multiplexed imaging, single-cell sequencing, or the vast amount of deep clinical phenotyping, the data generating technologies on the campus have been growing in throughput. The training and recruiting structures for the right profile of scientists capable of handling the resulting datasets are however missing.

In this workshop we plan to discuss a new graduate program designed for data scientists and data analysis addressing the needs described above. We want to define what requirements such a program should fulfill in training young scientists and how to make this structure visible and attractive outside of Cologne. We believe this program will allow not only to respond to the growing data analysis needs on campus but also facilitate recruiting computational talent.

Invited participants of the roundtable discussions:Oya Beyan - Andreas Beyer - Liliana Caldeira - Debora Grosskopf-Kroiher - Axel Klawonn - Michael Lässig - Martin Peifer - Achim Tresch

2:45 - 3:00 p.m.

Reports from the Workshops and Leave-Taking

Reports from Workshop 1 and 2 presented by the organizers
final discussions and leave-taking

Thomas Benzing - Chair of the CMMC